HL_9GXX_038

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

9GXX|1|Z|C|16, 9GXX|1|Z|G|18, 9GXX|1|Z|G|19, 9GXX|1|Z|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GXX_038 not in the Motif Atlas

Homologous match to HL_5B63_003

Geometric discrepancy: 0.1634

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_65478.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

4

Unit IDs

9GXX|1|Z|C|13
9GXX|1|Z|A|14
9GXX|1|Z|G|15
9GXX|1|Z|C|16
9GXX|1|Z|C|17
9GXX|1|Z|U|17|||A
9GXX|1|Z|G|18
9GXX|1|Z|G|19
9GXX|1|Z|U|20
9GXX|1|Z|A|21
9GXX|1|Z|G|22

Current chains

Chain Z

tRNA(fMet)

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain f

Large ribosomal subunit protein uL5