HL_9GXX_051

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9GXX|1|a|G|329, 9GXX|1|a|A|330, 9GXX|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GXX_051 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0829

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

9GXX|1|a|G|327
9GXX|1|a|U|328
9GXX|1|a|G|329
9GXX|1|a|A|330
9GXX|1|a|C|331
9GXX|1|a|A|332
9GXX|1|a|G|333
9GXX|1|a|C|334
9GXX|1|a|C|335

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24