3D structure

PDB id
9GXX (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.61 Å

Loop

Sequence
CGAGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9GXX_100 not in the Motif Atlas
Homologous match to HL_5J7L_197
Geometric discrepancy: 0.0864
The information below is about HL_5J7L_197
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

9GXX|1|a|C|2658
9GXX|1|a|G|2659
9GXX|1|a|A|2660
9GXX|1|a|G|2661
9GXX|1|a|A|2662
9GXX|1|a|G|2663

Current chains

Chain a
23S rRNA

Nearby chains

Chain g
Large ribosomal subunit protein uL6

Coloring options:


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