HL_9GY4_007
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUGUGAGGC
- Length
- 9 nucleotides
- Bulged bases
- 9GY4|1|5|G|232, 9GY4|1|5|U|233, 9GY4|1|5|G|234
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GY4_007 not in the Motif Atlas
- Homologous match to HL_8P9A_119
- Geometric discrepancy: 0.5182
- The information below is about HL_8P9A_119
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.3
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 15
Unit IDs
9GY4|1|5|G|230
9GY4|1|5|U|231
9GY4|1|5|G|232
9GY4|1|5|U|233
9GY4|1|5|G|234
9GY4|1|5|A|235
9GY4|1|5|G|236
9GY4|1|5|G|237
9GY4|1|5|C|238
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4
- Chain LY
- 60S ribosomal protein L26
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