HL_9GY4_019

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9GY4|1|5|A|1630, 9GY4|1|5|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GY4_019 not in the Motif Atlas

Homologous match to HL_8P9A_133

Geometric discrepancy: 0.0944

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9GY4|1|5|G|1627
9GY4|1|5|C|1628
9GY4|1|5|G|1629
9GY4|1|5|A|1630
9GY4|1|5|A|1631
9GY4|1|5|A|1632
9GY4|1|5|G|1633
9GY4|1|5|A|1634
9GY4|1|5|C|1635

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37

Chain a

60S ribosomal protein L8