HL_9GY4_025

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUGGAAGUCGG

Length

12 nucleotides

Bulged bases

9GY4|1|5|A|1984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GY4_025 not in the Motif Atlas

Homologous match to HL_8CRE_026

Geometric discrepancy: 0.5794

The information below is about HL_8CRE_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9GY4|1|5|C|1978
9GY4|1|5|A|1979
9GY4|1|5|U|1980
9GY4|1|5|G|1981
9GY4|1|5|G|1982
9GY4|1|5|A|1983
9GY4|1|5|A|1984
9GY4|1|5|G|1985
9GY4|1|5|U|1986
9GY4|1|5|C|1987
9GY4|1|5|G|1988
9GY4|1|5|G|1989

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Z

Ribosome quality control complex subunit NEMF

Chain t

Large ribosomal subunit protein uL11