HL_9GY4_026
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGUAACAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GY4_026 not in the Motif Atlas
- Homologous match to HL_8P9A_140
- Geometric discrepancy: 0.3269
- The information below is about HL_8P9A_140
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_98423.2
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
9GY4|1|5|U|2006
9GY4|1|5|G|2007
9GY4|1|5|U|2008
9GY4|1|5|A|2009
9GY4|1|5|A|2010
9GY4|1|5|C|2011
9GY4|1|5|A|2012
9GY4|1|5|A|2013
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain F
- E3 ubiquitin-protein ligase listerin
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
- Chain Z
- Ribosome quality control complex subunit NEMF
- Chain t
- Large ribosomal subunit protein uL11
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