HL_9GY4_027

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GY4_027 not in the Motif Atlas

Geometric match to HL_8XZL_001

Geometric discrepancy: 0.1587

The information below is about HL_8XZL_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12111.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9GY4|1|5|C|2257
9GY4|1|5|C|2258
9GY4|1|5|G|2259
9GY4|1|5|C|2260
9GY4|1|5|G|2261

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Lr

60S ribosomal protein L28