HL_9GY4_031

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GY4_031 not in the Motif Atlas

Homologous match to HL_8CRE_032

Geometric discrepancy: 0.1662

The information below is about HL_8CRE_032

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9GY4|1|5|C|2458
9GY4|1|5|G|2459
9GY4|1|5|A|2460
9GY4|1|5|G|2461
9GY4|1|5|C|2462
9GY4|1|5|G|2463

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37