HL_9GY4_032

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

9GY4|1|5|U|2530, 9GY4|1|5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GY4_032 not in the Motif Atlas

Homologous match to HL_8CRE_034

Geometric discrepancy: 0.1103

The information below is about HL_8CRE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9GY4|1|5|G|2523
9GY4|1|5|U|2524
9GY4|1|5|U|2525
9GY4|1|5|C|2526
9GY4|1|5|A|2527
9GY4|1|5|G|2528
9GY4|1|5|A|2529
9GY4|1|5|U|2530
9GY4|1|5|C|2531
9GY4|1|5|C|2532

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LX

60S ribosomal protein L23a

Chain Lg

60S ribosomal protein L34