HL_9GY4_049
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCAAACGGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 9GY4|1|5|A|4214, 9GY4|1|5|C|4221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GY4_049 not in the Motif Atlas
- Homologous match to HL_8CRE_054
- Geometric discrepancy: 0.115
- The information below is about HL_8CRE_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91939.2
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9GY4|1|5|U|4210
9GY4|1|5|C|4211
9GY4|1|5|A|4212
9GY4|1|5|A|4213
9GY4|1|5|A|4214
9GY4|1|5|C|4215
9GY4|1|5|G|4216
9GY4|1|5|G|4217
9GY4|1|5|U|4218
9GY4|1|5|A|4219
9GY4|1|5|A|4220
9GY4|1|5|C|4221
9GY4|1|5|G|4222
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LI
- Ribosomal protein uL16-like
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
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