HL_9GY4_054
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUUGGGUUUUA
- Length
- 11 nucleotides
- Bulged bases
- 9GY4|1|5|U|4354
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GY4_054 not in the Motif Atlas
- Geometric match to HL_7JRT_001
- Geometric discrepancy: 0.3365
- The information below is about HL_7JRT_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36265.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9GY4|1|5|U|4352
9GY4|1|5|U|4353
9GY4|1|5|U|4354
9GY4|1|5|G|4355
9GY4|1|5|G|4356
9GY4|1|5|G|4357
9GY4|1|5|U|4358
9GY4|1|5|U|4359
9GY4|1|5|U|4360
9GY4|1|5|U|4361
9GY4|1|5|A|4362
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain E
- E3 UFM1-protein ligase 1
- Chain LL
- 60S ribosomal protein L13
- Chain La
- 60S ribosomal protein L27a
- Chain Li
- 60S ribosomal protein L36
- Chain Lo
- 60S ribosomal protein L36a
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