HL_9GY4_057

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GY4_057 not in the Motif Atlas

Homologous match to HL_8P9A_174

Geometric discrepancy: 0.1361

The information below is about HL_8P9A_174

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9GY4|1|5|U|4497
9GY4|1|5|U|4498
9GY4|1|5|G|4499
9GY4|1|5|U|4500
9GY4|1|5|U|4501
9GY4|1|5|C|4502
9GY4|1|5|A|4503

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3