HL_9GY4_059

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GY4_059 not in the Motif Atlas

Homologous match to HL_8CRE_064

Geometric discrepancy: 0.0875

The information below is about HL_8CRE_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9GY4|1|5|C|4603
9GY4|1|5|G|4604
9GY4|1|5|A|4605
9GY4|1|5|G|4606
9GY4|1|5|A|4607
9GY4|1|5|G|4608

Current chains

Chain 5

28S rRNA

Nearby chains

Chain F

E3 ubiquitin-protein ligase listerin

Chain LH

60S ribosomal protein L9

Chain Lm

Ubiquitin-60S ribosomal protein L40

Chain Z

Ribosome quality control complex subunit NEMF