HL_9GY4_063

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

9GY4|1|5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GY4_063 not in the Motif Atlas

Homologous match to HL_8CRE_069

Geometric discrepancy: 0.0965

The information below is about HL_8CRE_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9GY4|1|5|G|4975
9GY4|1|5|U|4976
9GY4|1|5|A|4977
9GY4|1|5|G|4978
9GY4|1|5|A|4979
9GY4|1|5|C|4980
9GY4|1|5|G|4981
9GY4|1|5|A|4982
9GY4|1|5|C|4983

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17