HL_9GY4_070

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUAGCAUG

Length

9 nucleotides

Bulged bases

9GY4|1|G|A|34

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GY4_070 not in the Motif Atlas

Homologous match to HL_4JYZ_002

Geometric discrepancy: 0.5315

The information below is about HL_4JYZ_002

Detailed Annotation

tRNA anticodon loop with synthetase

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

9GY4|1|G|C|31
9GY4|1|G|U|32
9GY4|1|G|U|33
9GY4|1|G|A|34
9GY4|1|G|G|35
9GY4|1|G|C|36
9GY4|1|G|A|37
9GY4|1|G|U|38
9GY4|1|G|G|39

Current chains

Chain G

tRNA

Nearby chains

Chain Z

Ribosome quality control complex subunit NEMF