HL_9H0L_083

3D structure

PDB id

9H0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with cognate tRNASer3 bound to A-site AGC codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

9H0L|1|a|A|1780, 9H0L|1|a|U|1781, 9H0L|1|a|U|1782, 9H0L|1|a|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H0L_083 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0686

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

9H0L|1|a|U|1777
9H0L|1|a|U|1778
9H0L|1|a|U|1779
9H0L|1|a|A|1780
9H0L|1|a|U|1781
9H0L|1|a|U|1782
9H0L|1|a|A|1783
9H0L|1|a|A|1784
9H0L|1|a|A|1785
9H0L|1|a|A|1786
9H0L|1|a|A|1787

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain c

Large ribosomal subunit protein uL2