HL_9H21_002

3D structure

PDB id

9H21 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cas9 in complex with tracrRNA and crRNA, Streptococcus thermophilus DGCC 7710 CRISPR3 system

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H21_002 not in the Motif Atlas

Homologous match to HL_5VW1_003

Geometric discrepancy: 0.2713

The information below is about HL_5VW1_003

Detailed Annotation

GNRA with GA tSW pair

Broad Annotation

GNRA with GA tSW pair

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9H21|1|C|U|47
9H21|1|C|G|48
9H21|1|C|A|49
9H21|1|C|A|50
9H21|1|C|A|51
9H21|1|C|A|52

Current chains

Chain C

tracrRNA (62-MER)

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9