HL_9H3G_012

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

UU(PSU)GGGAAUG

Length

10 nucleotides

Bulged bases

9H3G|1|A|G|280, 9H3G|1|A|A|281, 9H3G|1|A|A|282

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

9H3G|1|A|U|275
9H3G|1|A|U|276
9H3G|1|A|PSU|277
9H3G|1|A|G|278
9H3G|1|A|G|279
9H3G|1|A|G|280
9H3G|1|A|A|281
9H3G|1|A|A|282
9H3G|1|A|U|283
9H3G|1|A|G|284

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AG

Large ribosomal subunit protein eL13z

Chain BD

Large ribosomal subunit protein eL42z/eL42y

Chain Ea

Large ribosomal subunit protein eL15z

Chain Ha

Large ribosomal subunit protein uL15x