HL_9H3G_026

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

(A2M)CGUGCAAA(PSU)

Length

10 nucleotides

Bulged bases

9H3G|1|A|U|888, 9H3G|1|A|A|892, 9H3G|1|A|A|893

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

12

Unit IDs

9H3G|1|A|A2M|885
9H3G|1|A|C|886
9H3G|1|A|G|887
9H3G|1|A|U|888
9H3G|1|A|G|889
9H3G|1|A|C|890
9H3G|1|A|A|891
9H3G|1|A|A|892
9H3G|1|A|A|893
9H3G|1|A|PSU|894

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AY

Large ribosomal subunit protein eL37z

Chain BM

Large ribosomal subunit protein uL22z

Chain BS

Large ribosomal subunit protein uL3z

Chain L3

Nascent polypeptide (poly-A)