HL_9H3G_056

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

UUAAAAG(A2M)UAACG

Length

13 nucleotides

Bulged bases

9H3G|1|A|A|2636, 9H3G|1|A|C|2643

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H3G|1|A|U|2632
9H3G|1|A|U|2633
9H3G|1|A|A|2634
9H3G|1|A|A|2635
9H3G|1|A|A|2636
9H3G|1|A|A|2637
9H3G|1|A|G|2638
9H3G|1|A|A2M|2639
9H3G|1|A|U|2640
9H3G|1|A|A|2641
9H3G|1|A|A|2642
9H3G|1|A|C|2643
9H3G|1|A|G|2644

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AM

Large ribosomal subunit protein eL21z/eL21y

Chain AR

60S ribosomal protein L29

Chain BJ

Large ribosomal subunit protein uL16y

Chain C3

5S ribosomal RNA; 5S rRNA