3D structure

PDB id
9H3L (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S subunit precursor C_(L29)-/(L22)-
Experimental method
ELECTRON MICROSCOPY
Resolution
5.84 Å

Loop

Sequence
GUGAAAAGC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9H3L_026 not in the Motif Atlas
Homologous match to HL_4WF9_032
Geometric discrepancy: 0.4309
The information below is about HL_4WF9_032
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

9H3L|1|A|G|1281
9H3L|1|A|U|1282
9H3L|1|A|G|1283
9H3L|1|A|A|1284
9H3L|1|A|A|1285
9H3L|1|A|A|1286
9H3L|1|A|A|1287
9H3L|1|A|G|1288
9H3L|1|A|C|1289

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain N
Large ribosomal subunit protein bL17

Coloring options:


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