9H3L Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9H3L_001 | No text annotation | ||
| HL_9H3L_002 | No text annotation | ||
| HL_9H3L_003 | No text annotation | ||
| HL_9H3L_004 | No text annotation | ||
| HL_9H3L_005 | No text annotation | ||
| HL_9H3L_006 | No text annotation | ||
| HL_9H3L_007 | No text annotation | ||
| HL_9H3L_008 | No text annotation | ||
| HL_9H3L_009 | T-loop with 2 stacked bulged bases | ||
| HL_9H3L_010 | No text annotation | ||
| HL_9H3L_011 | T-loop with unstacked turn | ||
| HL_9H3L_012 | No text annotation | ||
| HL_9H3L_013 | Pseudoknot geometry | ||
| HL_9H3L_014 | GNRA | ||
| HL_9H3L_015 | GNRA | ||
| HL_9H3L_016 | No text annotation | ||
| HL_9H3L_017 | T-loop with 2 stacked bulged bases | ||
| HL_9H3L_018 | No text annotation | ||
| HL_9H3L_019 | No text annotation | ||
| HL_9H3L_020 | GNRA | ||
| HL_9H3L_021 | No text annotation | ||
| HL_9H3L_022 | GNRA | ||
| HL_9H3L_023 | No text annotation | ||
| HL_9H3L_024 | Externally structured | ||
| HL_9H3L_025 | GNRA | ||
| HL_9H3L_026 | T-loop with 2 stacked bulged bases | ||
| HL_9H3L_027 | Pseudoknot geometry with 3' bulge | ||
| HL_9H3L_028 | GNRA | ||
| HL_9H3L_029 | No text annotation | ||
| HL_9H3L_030 | Mini UNCG with extended bulge | ||
| HL_9H3L_031 | No text annotation | ||
| HL_9H3L_032 | UNCG | ||
| HL_9H3L_033 | Mini UNCG | ||
| HL_9H3L_034 | No text annotation | ||
| HL_9H3L_035 | GNRA | ||
| HL_9H3L_036 | No text annotation | ||
| HL_9H3L_037 | No text annotation | ||
| HL_9H3L_038 | No text annotation | ||
| HL_9H3L_039 | GNRA variation | ||
| HL_9H3L_040 | No text annotation | ||
| HL_9H3L_041 | GNRA | ||
| HL_9H3L_042 | Ribsomal LSU H95 | ||
| HL_9H3L_043 | No text annotation | ||
| HL_9H3L_044 | No text annotation | ||
| HL_9H3L_045 | No text annotation | ||
| HL_9H3L_046 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9H3L_001 | Triple sheared with non-canonical cWW | ||
| IL_9H3L_002 | Single bulged A | ||
| IL_9H3L_003 | Minor groove platform | ||
| IL_9H3L_004 | No text annotation | ||
| IL_9H3L_005 | No text annotation | ||
| IL_9H3L_006 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_9H3L_007 | Single stack bend | ||
| IL_9H3L_008 | No text annotation | ||
| IL_9H3L_009 | No text annotation | ||
| IL_9H3L_010 | No text annotation | ||
| IL_9H3L_011 | No text annotation | ||
| IL_9H3L_012 | No text annotation | ||
| IL_9H3L_013 | Double sheared | ||
| IL_9H3L_014 | Isolated non-canonical cWW pair | ||
| IL_9H3L_015 | AAA cross-strand stack | ||
| IL_9H3L_016 | Single stack bend | ||
| IL_9H3L_017 | Isolated non-canonical cWW pair | ||
| IL_9H3L_018 | No text annotation | ||
| IL_9H3L_019 | 90 degree turn | ||
| IL_9H3L_020 | No text annotation | ||
| IL_9H3L_021 | Stack outside cWW | ||
| IL_9H3L_022 | Single stack bend | ||
| IL_9H3L_023 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_9H3L_024 | Single bulged C | ||
| IL_9H3L_025 | UAA/GAN | ||
| IL_9H3L_026 | SSU/LSU pseudoknot | ||
| IL_9H3L_027 | Single bulged U | ||
| IL_9H3L_028 | No text annotation | ||
| IL_9H3L_029 | Isolated cWS basepair | ||
| IL_9H3L_030 | No text annotation | ||
| IL_9H3L_031 | Kink-turn | ||
| IL_9H3L_032 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_9H3L_033 | C-loop | ||
| IL_9H3L_034 | UAA/GAN | ||
| IL_9H3L_035 | tSH-tHW-tHS | ||
| IL_9H3L_036 | No text annotation | ||
| IL_9H3L_037 | No text annotation | ||
| IL_9H3L_038 | Tandem non-canonical cWW pairs | ||
| IL_9H3L_039 | tSH-tHW | ||
| IL_9H3L_040 | Single bulged U | ||
| IL_9H3L_041 | No text annotation | ||
| IL_9H3L_042 | No text annotation | ||
| IL_9H3L_043 | 180 degree turn | ||
| IL_9H3L_044 | Single bulged A | ||
| IL_9H3L_045 | UAA/GAN variation | ||
| IL_9H3L_046 | No text annotation | ||
| IL_9H3L_047 | Isolated tWW turn | ||
| IL_9H3L_048 | Decoding loop related | ||
| IL_9H3L_049 | No text annotation | ||
| IL_9H3L_050 | Intercalated tWH | ||
| IL_9H3L_051 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_9H3L_052 | No text annotation | ||
| IL_9H3L_053 | No text annotation | ||
| IL_9H3L_054 | Isolated non-canonical cWW with bulges | ||
| IL_9H3L_055 | No text annotation | ||
| IL_9H3L_056 | Major groove platform with intercalation | ||
| IL_9H3L_057 | No text annotation | ||
| IL_9H3L_058 | No text annotation | ||
| IL_9H3L_059 | C-loop | ||
| IL_9H3L_060 | UAA/GAN related, with intercalation | ||
| IL_9H3L_061 | Multiple bulged bases | ||
| IL_9H3L_062 | UAA/GAN with extra cWW | ||
| IL_9H3L_063 | Isolated near basepair | ||
| IL_9H3L_064 | Single bulged A | ||
| IL_9H3L_065 | No text annotation | ||
| IL_9H3L_066 | Major groove intercalation | ||
| IL_9H3L_067 | Multiple bulged bases with non-canonical cWW | ||
| IL_9H3L_068 | tHS double platform |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9H3L_001 | No text annotation | ||
| J3_9H3L_002 | No text annotation | ||
| J3_9H3L_003 | No text annotation | ||
| J3_9H3L_004 | No text annotation | ||
| J3_9H3L_005 | No text annotation | ||
| J3_9H3L_006 | No text annotation | ||
| J3_9H3L_007 | No text annotation | ||
| J3_9H3L_008 | No text annotation | ||
| J3_9H3L_009 | No text annotation | ||
| J3_9H3L_010 | No text annotation | ||
| J4_9H3L_001 | No text annotation | ||
| J4_9H3L_002 | No text annotation | ||
| J4_9H3L_003 | No text annotation | ||
| J4_9H3L_004 | No text annotation | ||
| J4_9H3L_005 | No text annotation | ||
| J4_9H3L_006 | No text annotation | ||
| J4_9H3L_007 | No text annotation | ||
| J5_9H3L_001 | No text annotation | ||
| J5_9H3L_002 | No text annotation | ||
| J5_9H3L_003 | No text annotation | ||
| J5_9H3L_004 | No text annotation | ||
| J6_9H3L_001 | No text annotation | ||
| J7_9H3L_001 | No text annotation | ||
| J7_9H3L_002 | No text annotation |
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