3D structure

PDB id
9H3O (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S subunit precursor C_(L22)-_GAC
Experimental method
ELECTRON MICROSCOPY
Resolution
4.54 Å

Loop

Sequence
CGAAUAG
Length
7 nucleotides
Bulged bases
9H3O|1|A|A|613, 9H3O|1|A|A|614, 9H3O|1|A|U|615
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9H3O_018 not in the Motif Atlas
Homologous match to HL_5J7L_151
Geometric discrepancy: 0.4717
The information below is about HL_5J7L_151
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_80922.2
Basepair signature
cWW-tSH-F
Number of instances in this motif group
3

Unit IDs

9H3O|1|A|C|611
9H3O|1|A|G|612
9H3O|1|A|A|613
9H3O|1|A|A|614
9H3O|1|A|U|615
9H3O|1|A|A|616
9H3O|1|A|G|617

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain E
Large ribosomal subunit protein uL4

Coloring options:


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