9H3O Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9H3O_001 | 1/A/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_9H3O_002 | 1/A/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_9H3O_003 | 1/A/123:128 | No text annotation | homologous HL_5J7L_136 HL_82710.2 | |
| HL_9H3O_004 | 1/A/135:144 | No text annotation | ||
| HL_9H3O_005 | 1/A/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_9H3O_006 | 1/A/195:200 | No text annotation | ||
| HL_9H3O_007 | 1/A/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_9H3O_008 | 1/A/246:252 | No text annotation | homologous HL_4WF9_008 HL_37369.2 | |
| HL_9H3O_009 | 1/A/305:312 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_010 HL_01609.3 | |
| HL_9H3O_010 | 1/A/319:323 | No text annotation | homologous HL_4WF9_011 HL_75660.5 | |
| HL_9H3O_011 | 1/A/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_9H3O_012 | 1/A/381:393 | No text annotation | ||
| HL_9H3O_013 | 1/A/410:417 | No text annotation | homologous HL_9DFE_013 HL_30680.3 | |
| HL_9H3O_014 | 1/A/462:467 | GNRA | homologous HL_7A0S_015 HL_37824.7 | |
| HL_9H3O_015 | 1/A/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_9H3O_016 | 1/A/543:550 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_9H3O_017 | 1/A/566:575 | T-loop with 2 stacked bulged bases | homologous HL_9DFE_016 HL_28252.8 | |
| HL_9H3O_018 | 1/A/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_9H3O_019 | 1/A/630:634 | No text annotation | ||
| HL_9H3O_020 | 1/A/641:647 | GNRA | homologous HL_4WF9_021 HL_37824.7 | |
| HL_9H3O_021 | 1/A/779:785 | No text annotation | homologous HL_5J7L_156 HL_87954.2 | |
| HL_9H3O_022 | 1/A/826:831 | No text annotation | geometric HL_6DTD_001 HL_48417.5 | |
| HL_9H3O_023 | 1/A/955:962 | GNRA | homologous HL_4WF9_027 HL_37824.7 | |
| HL_9H3O_024 | 1/A/978:985 | No text annotation | homologous HL_9DFE_026 HL_42998.2 | |
| HL_9H3O_025 | 1/A/1092:1099 | No text annotation | homologous HL_9DFE_028 NA | |
| HL_9H3O_026 | 1/A/1172:1177 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_9H3O_027 | 1/A/1222:1227 | GNRA | homologous HL_7A0S_031 HL_37824.7 | |
| HL_9H3O_028 | 1/A/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_28252.8 | |
| HL_9H3O_029 | 1/A/1324:1330 | No text annotation | homologous HL_9DFE_032 HL_57176.2 | |
| HL_9H3O_030 | 1/A/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_9H3O_031 | 1/A/1389:1398 | No text annotation | homologous HL_9DFE_034 HL_81545.2 | |
| HL_9H3O_032 | 1/A/1451:1459 | Mini UNCG with extended bulge | homologous HL_5J7L_169 HL_22622.1 | |
| HL_9H3O_033 | 1/A/1492:1498 | No text annotation | ||
| HL_9H3O_034 | 1/A/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
| HL_9H3O_035 | 1/A/1565:1568 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_9H3O_036 | 1/A/1612:1619 | No text annotation | homologous HL_9DFE_038 HL_89567.2 | |
| HL_9H3O_037 | 1/A/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.7 | |
| HL_9H3O_038 | 1/A/1728:1733 | No text annotation | ||
| HL_9H3O_039 | 1/A/1752:1756 | No text annotation | homologous HL_5J7L_177 HL_80709.3 | |
| HL_9H3O_040 | 1/A/2027:2036 | No text annotation | homologous HL_5J7L_183 HL_61996.2 | |
| HL_9H3O_041 | 1/A/2471:2479 | No text annotation | homologous HL_9DFE_058 HL_32735.2 | |
| HL_9H3O_042 | 1/A/2528:2535 | Mini UNCG | geometric HL_4LFB_005 HL_48778.2 | |
| HL_9H3O_043 | 1/A/2551:2557 | No text annotation | homologous HL_7A0S_061 HL_30068.2 | |
| HL_9H3O_044 | 1/A/2594:2599 | GNRA | homologous HL_4WF9_059 HL_37824.7 | |
| HL_9H3O_045 | 1/A/2658:2663 | GNRA | homologous HL_9DFE_062 HL_37824.7 | |
| HL_9H3O_046 | 1/A/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_9H3O_047 | 1/A/2746:2758 | No text annotation | ||
| HL_9H3O_048 | 1/A/2796:2799 | No text annotation | geometric HL_8C3A_004 NA | |
| HL_9H3O_049 | 1/A/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_9H3O_050 | 1/A/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.7 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9H3O_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW | homologous IL_7A0S_001 IL_04021.2 | |
| IL_9H3O_002 | 1/A/36:37, 1/A/442:444 | Single bulged A | homologous IL_9DFE_002 IL_31462.6 | |
| IL_9H3O_003 | 1/A/43:44, 1/A/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_9H3O_004 | 1/A/82:85, 1/A/97:104 | No text annotation | ||
| IL_9H3O_005 | 1/A/183:184, 1/A/212:215 | No text annotation | ||
| IL_9H3O_006 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_006 IL_04346.10 | |
| IL_9H3O_007 | 1/A/237:239, 1/A/259:260 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_9H3O_008 | 1/A/239:245, 1/A/253:259 | No text annotation | ||
| IL_9H3O_009 | 1/A/269:271, 1/A/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_9H3O_010 | 1/A/274:281, 1/A/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_9H3O_011 | 1/A/293:295, 1/A/343:347 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_9H3O_012 | 1/A/481:484, 1/A/496:509 | No text annotation | homologous IL_5J7L_255 IL_81516.2 | |
| IL_9H3O_013 | 1/A/536:539, 1/A/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_9H3O_014 | 1/A/564:566, 1/A/575:577 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_07785.1 | |
| IL_9H3O_015 | 1/A/606:610, 1/A/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_9H3O_016 | 1/A/628:630, 1/A/634:635 | Single stack bend | geometric IL_8C3A_012 NA | |
| IL_9H3O_017 | 1/A/672:674, 1/A/806:808 | Isolated non-canonical cWW pair | homologous IL_7A0S_014 IL_87907.2 | |
| IL_9H3O_018 | 1/A/674:678, 1/A/799:806 | No text annotation | ||
| IL_9H3O_019 | 1/A/775:777, 1/A/787:791 | No text annotation | geometric IL_8VTW_022 NA | |
| IL_9H3O_020 | 1/A/844:847, 1/A/933:934 | Other IL | geometric IL_5J7L_267 IL_90729.1 | |
| IL_9H3O_021 | 1/A/844:848, 1/A/930:934 | No text annotation | homologous IL_5J7L_399 IL_96236.1 | |
| IL_9H3O_022 | 1/A/847:848, 1/A/930:933 | Stack outside cWW | homologous IL_5J7L_268 IL_56987.1 | |
| IL_9H3O_023 | 1/A/850:851, 1/A/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_9H3O_024 | 1/A/856:862, 1/A/915:921 | No text annotation | ||
| IL_9H3O_025 | 1/A/862:863, 1/A/913:915 | Minor groove platform | homologous IL_4WF9_032 IL_51454.3 | |
| IL_9H3O_026 | 1/A/994:996, 1/A/1159:1160 | Single bulged C | homologous IL_4WF9_035 IL_61258.15 | |
| IL_9H3O_027 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN | homologous IL_5J7L_277 IL_38507.2 | |
| IL_9H3O_028 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot | homologous IL_4WF9_037 IL_41203.4 | |
| IL_9H3O_029 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_9H3O_030 | 1/A/1018:1030, 1/A/1124:1144 | No text annotation | ||
| IL_9H3O_031 | 1/A/1030:1034, 1/A/1121:1124 | No text annotation | ||
| IL_9H3O_032 | 1/A/1038:1041, 1/A/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_9H3O_033 | 1/A/1043:1053, 1/A/1106:1112 | No text annotation | ||
| IL_9H3O_034 | 1/A/1055:1090, 1/A/1101:1104 | No text annotation | ||
| IL_9H3O_035 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.3 | |
| IL_9H3O_036 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_9H3O_037 | 1/A/1208:1215, 1/A/1234:1238 | Kink-turn | homologous IL_5J7L_288 IL_70923.9 | |
| IL_9H3O_038 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_9DFE_048 IL_04346.10 | |
| IL_9H3O_039 | 1/A/1310:1313, 1/A/1603:1604 | Major groove platform; stack outside cWW | homologous IL_5J7L_290 IL_50694.7 | |
| IL_9H3O_040 | 1/A/1319:1323, 1/A/1331:1333 | C-loop | homologous IL_7A0S_047 IL_83150.2 | |
| IL_9H3O_041 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN | homologous IL_7A0S_048 IL_89021.2 | |
| IL_9H3O_042 | 1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS | homologous IL_4WF9_052 IL_17136.7 | |
| IL_9H3O_043 | 1/A/1415:1417, 1/A/1581:1587 | No text annotation | ||
| IL_9H3O_044 | 1/A/1417:1422, 1/A/1576:1581 | No text annotation | ||
| IL_9H3O_045 | 1/A/1432:1435, 1/A/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_9H3O_046 | 1/A/1437:1440, 1/A/1551:1555 | No text annotation | homologous IL_9DFE_056 IL_99646.2 | |
| IL_9H3O_047 | 1/A/1450:1451, 1/A/1459:1461 | Single bulged U | homologous IL_5J7L_298 IL_89505.4 | |
| IL_9H3O_048 | 1/A/1468:1471, 1/A/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_9H3O_049 | 1/A/1474:1478, 1/A/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_9H3O_050 | 1/A/1481:1482, 1/A/1507:1510 | 180 degree turn | homologous IL_5J7L_301 IL_00881.1 | |
| IL_9H3O_051 | 1/A/1489:1491, 1/A/1499:1500 | Single bulged A | geometric IL_4L8H_001 IL_31462.6 | |
| IL_9H3O_052 | 1/A/1526:1529, 1/A/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_9H3O_053 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation | homologous IL_7A0S_059 IL_12566.4 | |
| IL_9H3O_054 | 1/A/1663:1669, 1/A/1993:1997 | No text annotation | ||
| IL_9H3O_055 | 1/A/1663:1674, 1/A/1990:1997 | No text annotation | ||
| IL_9H3O_056 | 1/A/1669:1674, 1/A/1990:1993 | Intercalated tWH | homologous IL_4WF9_065 IL_76758.2 | |
| IL_9H3O_057 | 1/A/1712:1718, 1/A/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_9H3O_058 | 1/A/1720:1724, 1/A/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
| IL_9H3O_059 | 1/A/1725:1727, 1/A/1734:1735 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_9H3O_060 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_9H3O_061 | 1/A/2457:2459, 1/A/2493:2494 | Major groove platform | homologous IL_7A0S_085 IL_48076.6 | |
| IL_9H3O_062 | 1/A/2459:2461, 1/A/2489:2493 | No text annotation | homologous IL_9DFE_094 IL_51387.2 | |
| IL_9H3O_063 | 1/A/2466:2470, 1/A/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_9H3O_064 | 1/A/2507:2508, 1/A/2580:2582 | Major groove platform | homologous IL_7A0S_088 IL_07039.3 | |
| IL_9H3O_065 | 1/A/2510:2512, 1/A/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_4WF9_095 IL_07785.1 | |
| IL_9H3O_066 | 1/A/2512:2513, 1/A/2571:2574 | Multiple bulged bases | homologous IL_7A0S_090 IL_42626.2 | |
| IL_9H3O_067 | 1/A/2522:2523, 1/A/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_9H3O_068 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A | geometric IL_2QUX_002 IL_31462.6 | |
| IL_9H3O_069 | 1/A/2636:2640, 1/A/2774:2782 | tSH-tHS-tHW | homologous IL_7A0S_093 IL_04638.3 | |
| IL_9H3O_070 | 1/A/2642:2644, 1/A/2771:2772 | Single stack bend | geometric IL_8C3A_012 NA | |
| IL_9H3O_071 | 1/A/2651:2658, 1/A/2663:2669 | No text annotation | ||
| IL_9H3O_072 | 1/A/2680:2684, 1/A/2725:2727 | C-loop | homologous IL_9DFE_103 IL_63596.11 | |
| IL_9H3O_073 | 1/A/2687:2691, 1/A/2718:2722 | No text annotation | homologous IL_5J7L_348 IL_23774.1 | |
| IL_9H3O_074 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_9H3O_075 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_9H3O_076 | 1/A/2795:2796, 1/A/2799:2801 | Single bulged A | geometric IL_8C3A_031 NA | |
| IL_9H3O_077 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation | homologous IL_5J7L_351 IL_29471.1 | |
| IL_9H3O_078 | 1/A/2838:2839, 1/A/2878:2880 | Major groove intercalation | homologous IL_9DFE_107 IL_61258.15 | |
| IL_9H3O_079 | 1/A/2843:2846, 1/A/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_9H3O_080 | 1/A/2847:2852, 1/A/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9H3O_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation | homologous J3_4WF9_010 J3_60031.2 | |
| J3_9H3O_002 | 1/A/32:35, 1/A/445:461, 1/A/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_9H3O_003 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_9H3O_004 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation | homologous J3_7A0S_004 J3_64189.2 | |
| J3_9H3O_005 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_9H3O_006 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation | homologous J3_5J7L_042 J3_19545.2 | |
| J3_9H3O_007 | 1/A/1344:1349, 1/A/1382:1385, 1/A/1402:1403 | No text annotation | homologous J3_5J7L_043 J3_92705.1 | |
| J3_9H3O_008 | 1/A/1423:1429, 1/A/1564:1565, 1/A/1568:1575 | No text annotation | ||
| J3_9H3O_009 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
| J3_9H3O_010 | 1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_9H3O_011 | 1/A/2812:2815, 1/A/2831:2836, 1/A/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J4_9H3O_001 | 1/A/268:269, 1/A/370:375, 1/A/399:406, 1/A/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_9H3O_002 | 1/A/297:301, 1/A/316:319, 1/A/323:325, 1/A/337:341 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_9H3O_003 | 1/A/601:604, 1/A/624:628, 1/A/635:638, 1/A/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_9H3O_004 | 1/A/1270:1276, 1/A/1294:1295, 1/A/1645:1648, 1/A/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_9H3O_005 | 1/A/1313:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_9H3O_006 | 1/A/1444:1445, 1/A/1466:1467, 1/A/1525:1526, 1/A/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_9H3O_007 | 1/A/2644:2646, 1/A/2674:2676, 1/A/2731:2735, 1/A/2769:2771 | No text annotation | ||
| J5_9H3O_001 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/148:152, 1/A/174:178 | No text annotation | ||
| J5_9H3O_002 | 1/A/531:533, 1/A/560:564, 1/A/577:579, 1/A/1261:1262, 1/A/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_9H3O_003 | 1/A/584:589, 1/A/668:671, 1/A/809:812, 1/A/1195:1196, 1/A/1250:1256 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_9H3O_004 | 1/A/1674:1682, 1/A/1706:1707, 1/A/1751:1752, 1/A/1756:1764, 1/A/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J6_9H3O_001 | 1/A/45:46, 1/A/179:183, 1/A/215:224, 1/A/231:235, 1/A/262:266, 1/A/426:433 | No text annotation | ||
| J7_9H3O_001 | 1/A/8:15, 1/A/525:531, 1/A/2018:2023, 1/A/2040:2043, 1/A/2625:2630, 1/A/2788:2789, 1/A/2894:2895 | No text annotation | ||
| J7_9H3O_002 | 1/A/817:822, 1/A/835:838, 1/A/940:946, 1/A/971:976, 1/A/987:991, 1/A/1163:1164, 1/A/1185:1190 | No text annotation |
Problematic loops
No problematic loops
Coloring options: