HL_9H3O_042

3D structure

PDB id

9H3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L22)-_GAC

Experimental method

ELECTRON MICROSCOPY

Resolution

4.54 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

9H3O|1|A|G|2529, 9H3O|1|A|A|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3O_042 not in the Motif Atlas

Geometric match to HL_4LFB_005

Geometric discrepancy: 0.3429

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9H3O|1|A|U|2528
9H3O|1|A|G|2529
9H3O|1|A|A|2530
9H3O|1|A|A|2531
9H3O|1|A|G|2532
9H3O|1|A|U|2533
9H3O|1|A|A|2534
9H3O|1|A|G|2535

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36A

Chain G

Large ribosomal subunit protein uL6