HL_9H3P_043

3D structure

PDB id

9H3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

7.06 Å

Loop

Sequence

ACUGGGGCGGU

Length

11 nucleotides

Bulged bases

9H3P|1|A|G|2250, 9H3P|1|A|G|2251, 9H3P|1|A|G|2252, 9H3P|1|A|G|2253, 9H3P|1|A|C|2254, 9H3P|1|A|G|2255, 9H3P|1|A|G|2256

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3P_043 not in the Motif Atlas

Geometric match to HL_1H4S_002

Geometric discrepancy: 0.3194

The information below is about HL_1H4S_002

Detailed Annotation

tRNA anticodon loop with synthetase

Broad Annotation

tRNA anticodon loop with synthetase

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

9H3P|1|A|A|2247
9H3P|1|A|C|2248
9H3P|1|A|U|2249
9H3P|1|A|G|2250
9H3P|1|A|G|2251
9H3P|1|A|G|2252
9H3P|1|A|G|2253
9H3P|1|A|C|2254
9H3P|1|A|G|2255
9H3P|1|A|G|2256
9H3P|1|A|U|2257

Current chains

Chain A

23S ribosomal RNA

Nearby chains