9H3P Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9H3P_001 | No text annotation | ||
| HL_9H3P_002 | No text annotation | ||
| HL_9H3P_003 | No text annotation | ||
| HL_9H3P_004 | No text annotation | ||
| HL_9H3P_005 | No text annotation | ||
| HL_9H3P_006 | No text annotation | ||
| HL_9H3P_007 | No text annotation | ||
| HL_9H3P_008 | No text annotation | ||
| HL_9H3P_009 | T-loop with 2 stacked bulged bases | ||
| HL_9H3P_010 | No text annotation | ||
| HL_9H3P_011 | T-loop with unstacked turn | ||
| HL_9H3P_012 | No text annotation | ||
| HL_9H3P_013 | Pseudoknot geometry | ||
| HL_9H3P_014 | GNRA | ||
| HL_9H3P_015 | GNRA | ||
| HL_9H3P_016 | Externally structured | ||
| HL_9H3P_017 | T-loop with 2 stacked bulged bases | ||
| HL_9H3P_018 | No text annotation | ||
| HL_9H3P_019 | GNRA | ||
| HL_9H3P_020 | No text annotation | ||
| HL_9H3P_021 | GNRA wlth tandem sheared | ||
| HL_9H3P_022 | No text annotation | ||
| HL_9H3P_023 | No text annotation | ||
| HL_9H3P_024 | No text annotation | ||
| HL_9H3P_025 | GNRA | ||
| HL_9H3P_026 | No text annotation | ||
| HL_9H3P_027 | No text annotation | ||
| HL_9H3P_028 | GNRA | ||
| HL_9H3P_029 | T-loop with 2 stacked bulged bases | ||
| HL_9H3P_030 | Pseudoknot geometry with 3' bulge | ||
| HL_9H3P_031 | GNRA | ||
| HL_9H3P_032 | No text annotation | ||
| HL_9H3P_033 | Mini UNCG with extended bulge | ||
| HL_9H3P_034 | No text annotation | ||
| HL_9H3P_035 | UNCG | ||
| HL_9H3P_036 | Mini UNCG | ||
| HL_9H3P_037 | No text annotation | ||
| HL_9H3P_038 | GNRA | ||
| HL_9H3P_039 | No text annotation | ||
| HL_9H3P_040 | No text annotation | ||
| HL_9H3P_041 | No text annotation | ||
| HL_9H3P_042 | No text annotation | ||
| HL_9H3P_043 | tRNA anticodon loop with synthetase | ||
| HL_9H3P_044 | No text annotation | ||
| HL_9H3P_045 | No text annotation | ||
| HL_9H3P_046 | Pseudoknot geometry | ||
| HL_9H3P_047 | GNRA | ||
| HL_9H3P_048 | GNRA | ||
| HL_9H3P_049 | No text annotation | ||
| HL_9H3P_050 | No text annotation | ||
| HL_9H3P_051 | No text annotation | ||
| HL_9H3P_052 | No text annotation | ||
| HL_9H3P_053 | GNRA | ||
| HL_9H3P_054 | Ribsomal LSU H95 | ||
| HL_9H3P_055 | No text annotation | ||
| HL_9H3P_056 | Mini UNCG | ||
| HL_9H3P_057 | No text annotation | ||
| HL_9H3P_058 | GNRA | ||
| HL_9H3P_059 | No text annotation | ||
| HL_9H3P_060 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9H3P_001 | Triple sheared with non-canonical cWW | ||
| IL_9H3P_002 | Single bulged A | ||
| IL_9H3P_003 | Minor groove platform | ||
| IL_9H3P_004 | No text annotation | ||
| IL_9H3P_005 | Single stack bend | ||
| IL_9H3P_006 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_9H3P_007 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_9H3P_008 | No text annotation | ||
| IL_9H3P_009 | No text annotation | ||
| IL_9H3P_010 | No text annotation | ||
| IL_9H3P_011 | No text annotation | ||
| IL_9H3P_012 | Double sheared | ||
| IL_9H3P_013 | Isolated non-canonical cWW pair | ||
| IL_9H3P_014 | AAA cross-strand stack | ||
| IL_9H3P_015 | Isolated non-canonical cWW pair | ||
| IL_9H3P_016 | No text annotation | ||
| IL_9H3P_017 | Single bulged A | ||
| IL_9H3P_018 | No text annotation | ||
| IL_9H3P_019 | No text annotation | ||
| IL_9H3P_020 | No text annotation | ||
| IL_9H3P_021 | 90 degree turn | ||
| IL_9H3P_022 | No text annotation | ||
| IL_9H3P_023 | Stack outside cWW | ||
| IL_9H3P_024 | Single bulged C | ||
| IL_9H3P_025 | UAA/GAN | ||
| IL_9H3P_026 | SSU/LSU pseudoknot | ||
| IL_9H3P_027 | Single bulged U | ||
| IL_9H3P_028 | No text annotation | ||
| IL_9H3P_029 | No text annotation | ||
| IL_9H3P_030 | Tandem non-canonical cWW pairs | ||
| IL_9H3P_031 | Isolated cWS basepair | ||
| IL_9H3P_032 | No text annotation | ||
| IL_9H3P_033 | Kink-turn | ||
| IL_9H3P_034 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_9H3P_035 | Major groove platform; stack outside cWW | ||
| IL_9H3P_036 | Major groove minor groove platform with tHH | ||
| IL_9H3P_037 | UAA/GAN | ||
| IL_9H3P_038 | tSH-tHW-tHS | ||
| IL_9H3P_039 | No text annotation | ||
| IL_9H3P_040 | Tandem non-canonical cWW pairs | ||
| IL_9H3P_041 | tSH-tHW | ||
| IL_9H3P_042 | Single bulged U | ||
| IL_9H3P_043 | No text annotation | ||
| IL_9H3P_044 | tSH-tHW-tHS | ||
| IL_9H3P_045 | 180 degree turn | ||
| IL_9H3P_046 | Isolated non-canonical cWW pair | ||
| IL_9H3P_047 | Single bulged A | ||
| IL_9H3P_048 | UAA/GAN variation | ||
| IL_9H3P_049 | No text annotation | ||
| IL_9H3P_050 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_9H3P_051 | Triple sheared with non-canonical cWW | ||
| IL_9H3P_052 | Single bulged C | ||
| IL_9H3P_053 | Major groove platform | ||
| IL_9H3P_054 | No text annotation | ||
| IL_9H3P_055 | No text annotation | ||
| IL_9H3P_056 | Multiple bulged bases | ||
| IL_9H3P_057 | No text annotation | ||
| IL_9H3P_058 | Isolated non-canonical cWW pair | ||
| IL_9H3P_059 | No text annotation | ||
| IL_9H3P_060 | Double sheared | ||
| IL_9H3P_061 | Tandem non-canonical cWW pairs | ||
| IL_9H3P_062 | Major groove platform | ||
| IL_9H3P_063 | No text annotation | ||
| IL_9H3P_064 | Double sheared with non-canonical cWW | ||
| IL_9H3P_065 | No text annotation | ||
| IL_9H3P_066 | Isolated non-canonical cWW with bulges | ||
| IL_9H3P_067 | Multiple bulged bases | ||
| IL_9H3P_068 | Major groove platform with intercalation | ||
| IL_9H3P_069 | tSH-tHS-tHW | ||
| IL_9H3P_070 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_9H3P_071 | C-loop | ||
| IL_9H3P_072 | UAA/GAN related, with intercalation | ||
| IL_9H3P_073 | Multiple bulged bases | ||
| IL_9H3P_074 | UAA/GAN with extra cWW | ||
| IL_9H3P_075 | Single bulged A | ||
| IL_9H3P_076 | No text annotation | ||
| IL_9H3P_077 | Major groove intercalation | ||
| IL_9H3P_078 | Multiple bulged bases with non-canonical cWW | ||
| IL_9H3P_079 | tHS double platform | ||
| IL_9H3P_080 | Major groove intercalation | ||
| IL_9H3P_081 | No text annotation | ||
| IL_9H3P_082 | No text annotation | ||
| IL_9H3P_083 | Symmetric double minor groove platform | ||
| IL_9H3P_084 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9H3P_001 | No text annotation | ||
| J3_9H3P_002 | No text annotation | ||
| J3_9H3P_003 | No text annotation | ||
| J3_9H3P_004 | No text annotation | ||
| J3_9H3P_005 | No text annotation | ||
| J3_9H3P_006 | No text annotation | ||
| J3_9H3P_007 | No text annotation | ||
| J3_9H3P_008 | No text annotation | ||
| J3_9H3P_009 | No text annotation | ||
| J3_9H3P_010 | No text annotation | ||
| J3_9H3P_011 | No text annotation | ||
| J3_9H3P_012 | No text annotation | ||
| J3_9H3P_013 | No text annotation | ||
| J3_9H3P_014 | No text annotation | ||
| J3_9H3P_015 | No text annotation | ||
| J4_9H3P_001 | No text annotation | ||
| J4_9H3P_002 | No text annotation | ||
| J4_9H3P_003 | No text annotation | ||
| J4_9H3P_004 | No text annotation | ||
| J4_9H3P_005 | No text annotation | ||
| J4_9H3P_006 | No text annotation | ||
| J4_9H3P_007 | No text annotation | ||
| J4_9H3P_008 | No text annotation | ||
| J5_9H3P_001 | No text annotation | ||
| J5_9H3P_002 | No text annotation | ||
| J5_9H3P_003 | No text annotation | ||
| J5_9H3P_004 | No text annotation | ||
| J6_9H3P_001 | No text annotation | ||
| J7_9H3P_001 | No text annotation | ||
| J7_9H3P_002 | No text annotation |
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