HL_9H3P_044

3D structure

PDB id

9H3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

7.06 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

9H3P|1|A|A|2268, 9H3P|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3P_044 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.2251

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9H3P|1|A|C|2264
9H3P|1|A|U|2265
9H3P|1|A|A|2266
9H3P|1|A|A|2267
9H3P|1|A|A|2268
9H3P|1|A|G|2269
9H3P|1|A|A|2270
9H3P|1|A|G|2271
9H3P|1|A|U|2272
9H3P|1|A|A|2273
9H3P|1|A|A|2274
9H3P|1|A|C|2275
9H3P|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain W

Large ribosomal subunit protein bL27