HL_9H3Q_008

3D structure

PDB id

9H3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

4.02 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3Q_008 not in the Motif Atlas

Homologous match to HL_5J7L_141

Geometric discrepancy: 0.1679

The information below is about HL_5J7L_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

9H3Q|1|A|C|246
9H3Q|1|A|G|247
9H3Q|1|A|G|248
9H3Q|1|A|C|249
9H3Q|1|A|G|250
9H3Q|1|A|A|251
9H3Q|1|A|G|252

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

UPF0307 protein YjgA

Chain L

Large ribosomal subunit protein uL15

Chain X

Large ribosomal subunit protein bL28