9H3Q Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9H3Q_001 | 1/A/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_9H3Q_002 | 1/A/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_9H3Q_003 | 1/A/123:128 | No text annotation | homologous HL_5J7L_136 HL_82710.2 | |
| HL_9H3Q_004 | 1/A/137:142 | No text annotation | ||
| HL_9H3Q_005 | 1/A/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_9H3Q_006 | 1/A/194:201 | No text annotation | homologous HL_4WF9_006 HL_30068.2 | |
| HL_9H3Q_007 | 1/A/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_9H3Q_008 | 1/A/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_9H3Q_009 | 1/A/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_9H3Q_010 | 1/A/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_9H3Q_011 | 1/A/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_9H3Q_012 | 1/A/410:417 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.3 | |
| HL_9H3Q_013 | 1/A/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.7 | |
| HL_9H3Q_014 | 1/A/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_9H3Q_015 | 1/A/545:548 | No text annotation | geometric HL_4V88_198 NA | |
| HL_9H3Q_016 | 1/A/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 HL_28252.8 | |
| HL_9H3Q_017 | 1/A/611:617 | No text annotation | geometric HL_5J7L_151 HL_80922.2 | |
| HL_9H3Q_018 | 1/A/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
| HL_9H3Q_019 | 1/A/641:647 | GNRA | homologous HL_4WF9_021 HL_37824.7 | |
| HL_9H3Q_020 | 1/A/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_9H3Q_021 | 1/A/744:753 | No text annotation | homologous HL_9DFE_021 HL_88205.2 | |
| HL_9H3Q_022 | 1/A/779:785 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_9H3Q_023 | 1/A/826:831 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_9H3Q_024 | 1/A/955:962 | GNRA | homologous HL_4WF9_027 HL_37824.7 | |
| HL_9H3Q_025 | 1/A/978:985 | No text annotation | homologous HL_9DFE_026 HL_42998.2 | |
| HL_9H3Q_026 | 1/A/1092:1099 | No text annotation | homologous HL_9DFE_028 NA | |
| HL_9H3Q_027 | 1/A/1171:1178 | No text annotation | geometric HL_7A0S_007 HL_53890.2 | |
| HL_9H3Q_028 | 1/A/1222:1227 | GNRA | homologous HL_7A0S_031 HL_37824.7 | |
| HL_9H3Q_029 | 1/A/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.8 | |
| HL_9H3Q_030 | 1/A/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_57176.2 | |
| HL_9H3Q_031 | 1/A/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_9H3Q_032 | 1/A/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_9H3Q_033 | 1/A/1451:1459 | Mini UNCG with extended bulge | homologous HL_5J7L_169 HL_22622.1 | |
| HL_9H3Q_034 | 1/A/1492:1498 | Pseudoknot geometry with 3' bulge | geometric HL_4V9F_035 HL_57176.2 | |
| HL_9H3Q_035 | 1/A/1533:1538 | No text annotation | ||
| HL_9H3Q_036 | 1/A/1565:1568 | Mini UNCG | geometric HL_5SWD_005 HL_48778.2 | |
| HL_9H3Q_037 | 1/A/1612:1619 | No text annotation | homologous HL_5J7L_173 HL_89567.2 | |
| HL_9H3Q_038 | 1/A/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.7 | |
| HL_9H3Q_039 | 1/A/2027:2036 | No text annotation | homologous HL_5J7L_183 HL_61996.2 | |
| HL_9H3Q_040 | 1/A/2142:2149 | No text annotation | ||
| HL_9H3Q_041 | 1/A/2209:2215 | No text annotation | homologous HL_4WF9_048 HL_49922.4 | |
| HL_9H3Q_042 | 1/A/2248:2256 | No text annotation | homologous HL_4WF9_049 HL_85367.2 | |
| HL_9H3Q_043 | 1/A/2264:2276 | No text annotation | homologous HL_5J7L_187 HL_91939.2 | |
| HL_9H3Q_044 | 1/A/2304:2312 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
| HL_9H3Q_045 | 1/A/2324:2331 | Pseudoknot geometry | homologous HL_9DFE_054 HL_93324.4 | |
| HL_9H3Q_046 | 1/A/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.7 | |
| HL_9H3Q_047 | 1/A/2374:2379 | GNRA | homologous HL_7A0S_057 HL_37824.7 | |
| HL_9H3Q_048 | 1/A/2404:2413 | No text annotation | homologous HL_7A0S_058 HL_53454.2 | |
| HL_9H3Q_049 | 1/A/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_9H3Q_050 | 1/A/2528:2535 | No text annotation | homologous HL_4WF9_057 HL_31585.4 | |
| HL_9H3Q_051 | 1/A/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_9H3Q_052 | 1/A/2594:2599 | No text annotation | geometric HL_4V88_198 NA | |
| HL_9H3Q_053 | 1/A/2658:2663 | GNRA | homologous HL_7A0S_063 HL_37824.7 | |
| HL_9H3Q_054 | 1/A/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_9H3Q_055 | 1/A/2745:2759 | No text annotation | homologous HL_4WF9_062 HL_74055.2 | |
| HL_9H3Q_056 | 1/A/2796:2799 | No text annotation | ||
| HL_9H3Q_057 | 1/A/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_9H3Q_058 | 1/A/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.7 | |
| HL_9H3Q_059 | 1/B/38:44 | No text annotation | homologous HL_8C3A_073 NA | |
| HL_9H3Q_060 | 1/B/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9H3Q_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_04021.2 | |
| IL_9H3Q_002 | 1/A/36:37, 1/A/442:444 | Single bulged A | homologous IL_5J7L_246 IL_31462.6 | |
| IL_9H3Q_003 | 1/A/43:44, 1/A/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_9H3Q_004 | 1/A/82:85, 1/A/97:104 | No text annotation | ||
| IL_9H3Q_005 | 1/A/183:184, 1/A/212:214 | Single stack bend | homologous IL_7A0S_005 IL_90729.1 | |
| IL_9H3Q_006 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_006 IL_04346.10 | |
| IL_9H3Q_007 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_9H3Q_008 | 1/A/269:271, 1/A/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_9H3Q_009 | 1/A/274:281, 1/A/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_9H3Q_010 | 1/A/293:295, 1/A/343:347 | No text annotation | homologous IL_9DFE_011 IL_69440.3 | |
| IL_9H3Q_011 | 1/A/481:484, 1/A/496:509 | No text annotation | homologous IL_9DFE_012 IL_81516.2 | |
| IL_9H3Q_012 | 1/A/536:539, 1/A/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_9H3Q_013 | 1/A/564:566, 1/A/575:577 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_07785.1 | |
| IL_9H3Q_014 | 1/A/606:610, 1/A/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_9H3Q_015 | 1/A/672:674, 1/A/806:808 | Isolated non-canonical cWW pair | homologous IL_7A0S_014 IL_87907.2 | |
| IL_9H3Q_016 | 1/A/674:678, 1/A/799:806 | tHW-tHW cross-strand stack | homologous IL_7A0S_015 IL_54041.2 | |
| IL_9H3Q_017 | 1/A/697:698, 1/A/763:765 | Single bulged A | homologous IL_9DFE_017 IL_31462.6 | |
| IL_9H3Q_018 | 1/A/702:707, 1/A/724:730 | Quadruple sheared | geometric IL_3FTF_001 IL_06136.2 | |
| IL_9H3Q_019 | 1/A/738:740, 1/A/757:758 | Major groove platform | geometric IL_4LFB_024 IL_48076.6 | |
| IL_9H3Q_020 | 1/A/775:777, 1/A/787:791 | No text annotation | geometric IL_8VTW_022 NA | |
| IL_9H3Q_021 | 1/A/844:847, 1/A/933:934 | Other IL | geometric IL_5J7L_267 IL_90729.1 | |
| IL_9H3Q_022 | 1/A/844:848, 1/A/930:934 | No text annotation | geometric IL_5J7L_399 IL_96236.1 | |
| IL_9H3Q_023 | 1/A/847:848, 1/A/930:933 | Stack outside cWW | homologous IL_5J7L_268 IL_56987.1 | |
| IL_9H3Q_024 | 1/A/850:851, 1/A/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_9H3Q_025 | 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 IL_29198.2 | |
| IL_9H3Q_026 | 1/A/862:863, 1/A/913:915 | Single bulged G | homologous IL_5J7L_271 IL_00225.13 | |
| IL_9H3Q_027 | 1/A/864:868, 1/A/909:912 | C-loop | homologous IL_5J7L_272 IL_26222.2 | |
| IL_9H3Q_028 | 1/A/870:872, 1/A/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
| IL_9H3Q_029 | 1/A/875:879, 1/A/898:902 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_9H3Q_030 | 1/A/994:996, 1/A/1159:1160 | Single bulged C | homologous IL_4WF9_035 IL_61258.15 | |
| IL_9H3Q_031 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN | homologous IL_5J7L_277 IL_38507.2 | |
| IL_9H3Q_032 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot | homologous IL_5J7L_278 IL_41203.4 | |
| IL_9H3Q_033 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U | homologous IL_4WF9_038 IL_89505.4 | |
| IL_9H3Q_034 | 1/A/1018:1024, 1/A/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_9H3Q_035 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation | homologous IL_5J7L_281 IL_50715.3 | |
| IL_9H3Q_036 | 1/A/1031:1034, 1/A/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_57744.1 | |
| IL_9H3Q_037 | 1/A/1038:1041, 1/A/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_9H3Q_038 | 1/A/1043:1052, 1/A/1107:1112 | No text annotation | ||
| IL_9H3Q_039 | 1/A/1055:1090, 1/A/1101:1104 | No text annotation | ||
| IL_9H3Q_040 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.3 | |
| IL_9H3Q_041 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_9H3Q_042 | 1/A/1208:1215, 1/A/1234:1238 | Kink-turn | homologous IL_5J7L_288 IL_70923.9 | |
| IL_9H3Q_043 | 1/A/1310:1313, 1/A/1603:1604 | Major groove platform; stack outside cWW | geometric IL_4V9F_008 IL_50694.7 | |
| IL_9H3Q_044 | 1/A/1319:1323, 1/A/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_9H3Q_045 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
| IL_9H3Q_046 | 1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_9H3Q_047 | 1/A/1414:1416, 1/A/1582:1588 | No text annotation | ||
| IL_9H3Q_048 | 1/A/1417:1421, 1/A/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_9H3Q_049 | 1/A/1432:1435, 1/A/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_9H3Q_050 | 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW | homologous IL_5J7L_297 IL_99646.2 | |
| IL_9H3Q_051 | 1/A/1450:1451, 1/A/1459:1461 | Single bulged U | homologous IL_5J7L_298 IL_89505.4 | |
| IL_9H3Q_052 | 1/A/1473:1480, 1/A/1510:1518 | No text annotation | ||
| IL_9H3Q_053 | 1/A/1480:1482, 1/A/1507:1510 | 180 degree turn | homologous IL_5J7L_301 IL_00881.1 | |
| IL_9H3Q_054 | 1/A/1489:1491, 1/A/1499:1500 | No text annotation | geometric IL_8VTW_057 NA | |
| IL_9H3Q_055 | 1/A/1526:1529, 1/A/1541:1546 | No text annotation | ||
| IL_9H3Q_056 | 1/A/1529:1531, 1/A/1540:1541 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_9H3Q_057 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform | homologous IL_9DFE_078 IL_48076.6 | |
| IL_9H3Q_058 | 1/A/2067:2069, 1/A/2442:2443 | Single bulged U | homologous IL_9DFE_080 IL_89505.4 | |
| IL_9H3Q_059 | 1/A/2070:2071, 1/A/2438:2441 | Minor groove platform | homologous IL_4WF9_081 IL_51454.3 | |
| IL_9H3Q_060 | 1/A/2081:2083, 1/A/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7A0S_077 IL_85599.2 | |
| IL_9H3Q_061 | 1/A/2085:2087, 1/A/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 IL_28037.2 | |
| IL_9H3Q_062 | 1/A/2102:2104, 1/A/2186:2187 | No text annotation | ||
| IL_9H3Q_063 | 1/A/2104:2106, 1/A/2183:2186 | No text annotation | geometric IL_4P3T_002 NA | |
| IL_9H3Q_064 | 1/A/2108:2120, 1/A/2178:2181 | No text annotation | ||
| IL_9H3Q_065 | 1/A/2124:2137, 1/A/2154:2174 | No text annotation | ||
| IL_9H3Q_066 | 1/A/2202:2204, 1/A/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_9H3Q_067 | 1/A/2297:2299, 1/A/2317:2321 | No text annotation | geometric IL_5J7L_332 IL_61476.2 | |
| IL_9H3Q_068 | 1/A/2350:2353, 1/A/2364:2367 | Double sheared | homologous IL_9DFE_089 IL_09705.15 | |
| IL_9H3Q_069 | 1/A/2401:2403, 1/A/2414:2415 | Single bulged U | geometric IL_7PMM_002 IL_89505.4 | |
| IL_9H3Q_070 | 1/A/2454:2455, 1/A/2496:2498 | Major groove platform | homologous IL_4WF9_090 IL_48076.6 | |
| IL_9H3Q_071 | 1/A/2457:2461, 1/A/2489:2494 | No text annotation | ||
| IL_9H3Q_072 | 1/A/2466:2470, 1/A/2480:2484 | Triple sheared | homologous IL_4WF9_093 IL_17948.2 | |
| IL_9H3Q_073 | 1/A/2507:2508, 1/A/2580:2582 | Major groove platform | homologous IL_7A0S_088 IL_07039.3 | |
| IL_9H3Q_074 | 1/A/2510:2512, 1/A/2574:2578 | No text annotation | homologous IL_9DFE_097 IL_07785.1 | |
| IL_9H3Q_075 | 1/A/2512:2513, 1/A/2571:2574 | No text annotation | homologous IL_5J7L_341 IL_42626.2 | |
| IL_9H3Q_076 | 1/A/2522:2523, 1/A/2540:2543 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_02555.1 | |
| IL_9H3Q_078 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A | homologous IL_5J7L_344 IL_31462.6 | |
| IL_9H3Q_079 | 1/A/2636:2640, 1/A/2774:2782 | tSH-tHS-tHW | homologous IL_7A0S_093 IL_04638.3 | |
| IL_9H3Q_080 | 1/A/2642:2644, 1/A/2771:2772 | Single stack bend | geometric IL_8C3A_091 NA | |
| IL_9H3Q_081 | 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.4 | |
| IL_9H3Q_082 | 1/A/2680:2684, 1/A/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_9H3Q_083 | 1/A/2687:2691, 1/A/2718:2722 | No text annotation | homologous IL_5J7L_348 IL_23774.1 | |
| IL_9H3Q_084 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_9H3Q_085 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_49767.8 | |
| IL_9H3Q_086 | 1/A/2795:2796, 1/A/2799:2801 | Single bulged A | geometric IL_4WF9_022 IL_31462.6 | |
| IL_9H3Q_087 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation | homologous IL_5J7L_351 IL_29471.1 | |
| IL_9H3Q_088 | 1/A/2838:2839, 1/A/2878:2880 | Major groove intercalation | homologous IL_4WF9_106 IL_66635.5 | |
| IL_9H3Q_089 | 1/A/2843:2846, 1/A/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_9H3Q_090 | 1/A/2847:2852, 1/A/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
| IL_9H3Q_091 | 1/B/17:18, 1/B/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.6 | |
| IL_9H3Q_092 | 1/B/23:28, 1/B/56:60 | No text annotation | homologous IL_9DFE_111 IL_18472.4 | |
| IL_9H3Q_093 | 1/B/30:31, 1/B/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4WF9_126 IL_68140.4 | |
| IL_9H3Q_094 | 1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 IL_58103.11 | |
| IL_9H3Q_095 | 1/B/71:79, 1/B/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9H3Q_077 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9H3Q_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation | homologous J3_4WF9_010 J3_60031.2 | |
| J3_9H3Q_002 | 1/A/32:35, 1/A/445:461, 1/A/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_9H3Q_003 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_9H3Q_004 | 1/A/297:301, 1/A/316:325, 1/A/337:341 | No text annotation | homologous J3_5J7L_068 J3_46299.2 | |
| J3_9H3Q_005 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_9H3Q_006 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation | homologous J3_9DFE_008 J3_44724.7 | |
| J3_9H3Q_007 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation | homologous J3_7A0S_006 J3_32852.6 | |
| J3_9H3Q_008 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation | homologous J3_5J7L_042 J3_19545.2 | |
| J3_9H3Q_009 | 1/A/1344:1349, 1/A/1382:1385, 1/A/1402:1403 | No text annotation | homologous J3_5J7L_043 J3_92705.1 | |
| J3_9H3Q_010 | 1/A/1424:1429, 1/A/1564:1565, 1/A/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_9H3Q_011 | 1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_9H3Q_012 | 1/A/2295:2297, 1/A/2321:2323, 1/A/2332:2337 | No text annotation | geometric J3_5J7L_045 J3_61124.2 | |
| J3_9H3Q_013 | 1/A/2295:2299, 1/A/2317:2323, 1/A/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_9H3Q_014 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
| J3_9H3Q_015 | 1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_9H3Q_016 | 1/A/2812:2815, 1/A/2831:2836, 1/A/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_9H3Q_017 | 1/B/10:16, 1/B/68:70, 1/B/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J4_9H3Q_001 | 1/A/268:269, 1/A/370:375, 1/A/399:406, 1/A/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_9H3Q_002 | 1/A/601:604, 1/A/624:628, 1/A/635:638, 1/A/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_9H3Q_003 | 1/A/1262:1276, 1/A/1294:1295, 1/A/1645:1656, 1/A/2004:2017 | No text annotation | ||
| J4_9H3Q_004 | 1/A/1310:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_9H3Q_005 | 1/A/1313:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_9H3Q_006 | 1/A/1444:1446, 1/A/1465:1471, 1/A/1520:1526, 1/A/1546:1547 | No text annotation | ||
| J4_9H3Q_007 | 1/A/2285:2289, 1/A/2343:2347, 1/A/2370:2372, 1/A/2381:2383 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
| J4_9H3Q_008 | 1/A/2644:2646, 1/A/2674:2676, 1/A/2731:2735, 1/A/2769:2771 | No text annotation | ||
| J5_9H3Q_001 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/148:151, 1/A/175:178 | No text annotation | ||
| J5_9H3Q_002 | 1/A/531:533, 1/A/560:564, 1/A/577:579, 1/A/1261:1262, 1/A/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_9H3Q_003 | 1/A/584:589, 1/A/668:671, 1/A/809:812, 1/A/1195:1196, 1/A/1250:1256 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_9H3Q_004 | 1/A/2054:2064, 1/A/2446:2454, 1/A/2498:2507, 1/A/2582:2588, 1/A/2606:2615 | No text annotation | ||
| J6_9H3Q_001 | 1/A/45:46, 1/A/179:183, 1/A/214:225, 1/A/230:235, 1/A/262:266, 1/A/426:433 | No text annotation | ||
| J6_9H3Q_002 | 1/A/2074:2077, 1/A/2243:2246, 1/A/2258:2259, 1/A/2281:2284, 1/A/2384:2395, 1/A/2421:2435 | No text annotation | ||
| J7_9H3Q_001 | 1/A/8:15, 1/A/525:531, 1/A/2018:2023, 1/A/2040:2043, 1/A/2625:2631, 1/A/2787:2789, 1/A/2894:2895 | No text annotation | ||
| J7_9H3Q_002 | 1/A/817:822, 1/A/835:838, 1/A/940:946, 1/A/971:976, 1/A/987:991, 1/A/1163:1164, 1/A/1185:1190 | No text annotation |
Problematic loops
No problematic loops
Coloring options: