HL_9H3Q_039

3D structure

PDB id

9H3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

4.02 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

9H3Q|1|A|A|2030, 9H3Q|1|A|A|2031, 9H3Q|1|A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3Q_039 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.1746

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

9H3Q|1|A|G|2027
9H3Q|1|A|U|2028
9H3Q|1|A|G|2029
9H3Q|1|A|A|2030
9H3Q|1|A|A|2031
9H3Q|1|A|G|2032
9H3Q|1|A|A|2033
9H3Q|1|A|U|2034
9H3Q|1|A|G|2035
9H3Q|1|A|C|2036

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

Large ribosomal subunit protein bL21