HL_9H3Q_055

3D structure

PDB id

9H3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

4.02 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9H3Q|1|A|G|2751, 9H3Q|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3Q_055 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1455

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9H3Q|1|A|C|2745
9H3Q|1|A|U|2746
9H3Q|1|A|G|2747
9H3Q|1|A|A|2748
9H3Q|1|A|A|2749
9H3Q|1|A|A|2750
9H3Q|1|A|G|2751
9H3Q|1|A|C|2752
9H3Q|1|A|A|2753
9H3Q|1|A|U|2754
9H3Q|1|A|C|2755
9H3Q|1|A|U|2756
9H3Q|1|A|A|2757
9H3Q|1|A|A|2758
9H3Q|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36A

Chain G

Large ribosomal subunit protein uL6

Chain J

Large ribosomal subunit protein uL13