HL_9H3S_006

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9H3S|1|A|A|196, 9H3S|1|A|A|199

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3S_006 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.163

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9H3S|1|A|G|194
9H3S|1|A|A|195
9H3S|1|A|A|196
9H3S|1|A|A|197
9H3S|1|A|C|198
9H3S|1|A|A|199
9H3S|1|A|U|200
9H3S|1|A|C|201

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

UPF0307 protein YjgA

Chain L

Large ribosomal subunit protein uL15

Chain X

Large ribosomal subunit protein bL28