HL_9H3S_024

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

9H3S|1|A|U|958, 9H3S|1|A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3S_024 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.2532

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9H3S|1|A|U|955
9H3S|1|A|G|956
9H3S|1|A|C|957
9H3S|1|A|U|958
9H3S|1|A|A|959
9H3S|1|A|A|960
9H3S|1|A|C|961
9H3S|1|A|G|962

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA