HL_9H3S_042

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

9H3S|1|A|A|1780, 9H3S|1|A|U|1781, 9H3S|1|A|U|1782, 9H3S|1|A|A|1786

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3S_042 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.3286

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9H3S|1|A|U|1777
9H3S|1|A|U|1778
9H3S|1|A|U|1779
9H3S|1|A|A|1780
9H3S|1|A|U|1781
9H3S|1|A|U|1782
9H3S|1|A|A|1783
9H3S|1|A|A|1784
9H3S|1|A|A|1785
9H3S|1|A|A|1786
9H3S|1|A|A|1787

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34