HL_9H3S_047

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

9H3S|1|A|A|2268, 9H3S|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3S_047 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.1232

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9H3S|1|A|C|2264
9H3S|1|A|U|2265
9H3S|1|A|A|2266
9H3S|1|A|A|2267
9H3S|1|A|A|2268
9H3S|1|A|G|2269
9H3S|1|A|A|2270
9H3S|1|A|G|2271
9H3S|1|A|U|2272
9H3S|1|A|A|2273
9H3S|1|A|A|2274
9H3S|1|A|C|2275
9H3S|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

Large ribosomal subunit protein bL27