HL_9H3S_054

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

9H3S|1|A|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3S_054 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1523

The information below is about HL_5J7L_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

9H3S|1|A|U|2528
9H3S|1|A|G|2529
9H3S|1|A|A|2530
9H3S|1|A|A|2531
9H3S|1|A|G|2532
9H3S|1|A|U|2533
9H3S|1|A|A|2534
9H3S|1|A|G|2535

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36A

Chain G

Large ribosomal subunit protein uL6