HL_9H3S_059

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9H3S|1|A|G|2751, 9H3S|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3S_059 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1141

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9H3S|1|A|C|2745
9H3S|1|A|U|2746
9H3S|1|A|G|2747
9H3S|1|A|A|2748
9H3S|1|A|A|2749
9H3S|1|A|A|2750
9H3S|1|A|G|2751
9H3S|1|A|C|2752
9H3S|1|A|A|2753
9H3S|1|A|U|2754
9H3S|1|A|C|2755
9H3S|1|A|U|2756
9H3S|1|A|A|2757
9H3S|1|A|A|2758
9H3S|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36A

Chain G

Large ribosomal subunit protein uL6

Chain J

Large ribosomal subunit protein uL13