HL_9H3U_010

3D structure

PDB id

9H3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_H68

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9H3U|1|A|G|329, 9H3U|1|A|A|330, 9H3U|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3U_010 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.143

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

9H3U|1|A|G|327
9H3U|1|A|U|328
9H3U|1|A|G|329
9H3U|1|A|A|330
9H3U|1|A|C|331
9H3U|1|A|A|332
9H3U|1|A|G|333
9H3U|1|A|C|334
9H3U|1|A|C|335

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain U

Large ribosomal subunit protein uL24