HL_9H3V_015

3D structure

PDB id

9H3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_L2-L28

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

9H3V|1|A|U|545, 9H3V|1|A|U|546, 9H3V|1|A|A|547, 9H3V|1|A|G|548, 9H3V|1|A|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3V_015 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.3677

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

9H3V|1|A|G|543
9H3V|1|A|C|544
9H3V|1|A|U|545
9H3V|1|A|U|546
9H3V|1|A|A|547
9H3V|1|A|G|548
9H3V|1|A|G|549
9H3V|1|A|C|550

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13

Chain R

Large ribosomal subunit protein bL21