HL_9H3V_046

3D structure

PDB id

9H3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_L2-L28

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9H3V|1|A|U|2249, 9H3V|1|A|G|2250, 9H3V|1|A|G|2251, 9H3V|1|A|G|2252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3V_046 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3043

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

9H3V|1|A|C|2248
9H3V|1|A|U|2249
9H3V|1|A|G|2250
9H3V|1|A|G|2251
9H3V|1|A|G|2252
9H3V|1|A|G|2253
9H3V|1|A|C|2254
9H3V|1|A|G|2255
9H3V|1|A|G|2256

Current chains

Chain A

23S ribosomal RNA

Nearby chains