HL_9H3W_006

3D structure

PDB id

9H3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68

Experimental method

ELECTRON MICROSCOPY

Resolution

5.38 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9H3W|1|A|A|196, 9H3W|1|A|A|199

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3W_006 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.2495

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9H3W|1|A|G|194
9H3W|1|A|A|195
9H3W|1|A|A|196
9H3W|1|A|A|197
9H3W|1|A|C|198
9H3W|1|A|A|199
9H3W|1|A|U|200
9H3W|1|A|C|201

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15

Chain X

Large ribosomal subunit protein bL28