9H3W Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9H3W_001 | No text annotation | ||
| HL_9H3W_002 | No text annotation | ||
| HL_9H3W_003 | No text annotation | ||
| HL_9H3W_004 | Externally structured | ||
| HL_9H3W_005 | No text annotation | ||
| HL_9H3W_006 | No text annotation | ||
| HL_9H3W_007 | No text annotation | ||
| HL_9H3W_008 | No text annotation | ||
| HL_9H3W_009 | T-loop with 2 stacked bulged bases | ||
| HL_9H3W_010 | No text annotation | ||
| HL_9H3W_011 | T-loop with unstacked turn | ||
| HL_9H3W_012 | No text annotation | ||
| HL_9H3W_013 | Pseudoknot geometry | ||
| HL_9H3W_014 | GNRA | ||
| HL_9H3W_015 | GNRA | ||
| HL_9H3W_016 | No text annotation | ||
| HL_9H3W_017 | T-loop with 2 stacked bulged bases | ||
| HL_9H3W_018 | No text annotation | ||
| HL_9H3W_019 | GNRA | ||
| HL_9H3W_020 | Externally structured | ||
| HL_9H3W_021 | GNRA wlth tandem sheared | ||
| HL_9H3W_022 | No text annotation | ||
| HL_9H3W_023 | UNCG variation | ||
| HL_9H3W_024 | No text annotation | ||
| HL_9H3W_025 | GNRA | ||
| HL_9H3W_026 | No text annotation | ||
| HL_9H3W_027 | No text annotation | ||
| HL_9H3W_028 | GNRA | ||
| HL_9H3W_029 | T-loop with 2 stacked bulged bases | ||
| HL_9H3W_030 | Pseudoknot geometry with 3' bulge | ||
| HL_9H3W_031 | GNRA | ||
| HL_9H3W_032 | No text annotation | ||
| HL_9H3W_033 | Mini UNCG with extended bulge | ||
| HL_9H3W_034 | Pseudoknot geometry with 3' bulge | ||
| HL_9H3W_035 | UNCG | ||
| HL_9H3W_036 | Mini UNCG | ||
| HL_9H3W_037 | No text annotation | ||
| HL_9H3W_038 | GNRA | ||
| HL_9H3W_039 | UNCG | ||
| HL_9H3W_040 | No text annotation | ||
| HL_9H3W_041 | No text annotation | ||
| HL_9H3W_042 | No text annotation | ||
| HL_9H3W_043 | GNRA related | ||
| HL_9H3W_044 | GNRA variation | ||
| HL_9H3W_045 | No text annotation | ||
| HL_9H3W_046 | No text annotation | ||
| HL_9H3W_047 | UNCG | ||
| HL_9H3W_048 | No text annotation | ||
| HL_9H3W_049 | No text annotation | ||
| HL_9H3W_050 | No text annotation | ||
| HL_9H3W_051 | No text annotation | ||
| HL_9H3W_052 | Pseudoknot geometry | ||
| HL_9H3W_053 | GNRA | ||
| HL_9H3W_054 | GNRA | ||
| HL_9H3W_055 | No text annotation | ||
| HL_9H3W_056 | GNRA | ||
| HL_9H3W_057 | Ribsomal LSU H95 | ||
| HL_9H3W_058 | No text annotation | ||
| HL_9H3W_059 | No text annotation | ||
| HL_9H3W_060 | No text annotation | ||
| HL_9H3W_061 | GNRA | ||
| HL_9H3W_062 | No text annotation | ||
| HL_9H3W_063 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9H3W_001 | Single bulged A | ||
| IL_9H3W_002 | Minor groove platform with extra cWW | ||
| IL_9H3W_003 | No text annotation | ||
| IL_9H3W_004 | No text annotation | ||
| IL_9H3W_005 | Single stack bend | ||
| IL_9H3W_006 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_9H3W_007 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_9H3W_008 | No text annotation | ||
| IL_9H3W_009 | No text annotation | ||
| IL_9H3W_010 | No text annotation | ||
| IL_9H3W_011 | No text annotation | ||
| IL_9H3W_012 | Double sheared | ||
| IL_9H3W_013 | Isolated non-canonical cWW pair | ||
| IL_9H3W_014 | AAA cross-strand stack | ||
| IL_9H3W_015 | Isolated non-canonical cWW pair | ||
| IL_9H3W_016 | tHW-tHW cross-strand stack | ||
| IL_9H3W_017 | Single bulged A | ||
| IL_9H3W_018 | No text annotation | ||
| IL_9H3W_019 | No text annotation | ||
| IL_9H3W_020 | No text annotation | ||
| IL_9H3W_021 | 90 degree turn | ||
| IL_9H3W_022 | No text annotation | ||
| IL_9H3W_023 | Stack outside cWW | ||
| IL_9H3W_024 | Single stack bend | ||
| IL_9H3W_025 | Single stack bend | ||
| IL_9H3W_026 | No text annotation | ||
| IL_9H3W_027 | Single bulged G | ||
| IL_9H3W_028 | C-loop with bulged stacked A's | ||
| IL_9H3W_029 | Isolated non-canonical cWW pair | ||
| IL_9H3W_030 | Double sheared with non-canonical cWW | ||
| IL_9H3W_031 | No text annotation | ||
| IL_9H3W_032 | Single bulged C | ||
| IL_9H3W_033 | UAA/GAN | ||
| IL_9H3W_034 | SSU/LSU pseudoknot | ||
| IL_9H3W_035 | Single bulged U | ||
| IL_9H3W_036 | Kink-turn related | ||
| IL_9H3W_037 | No text annotation | ||
| IL_9H3W_038 | Isolated non-canonical cWW pair | ||
| IL_9H3W_039 | Tandem non-canonical cWW pairs | ||
| IL_9H3W_040 | Isolated cWS basepair | ||
| IL_9H3W_041 | No text annotation | ||
| IL_9H3W_042 | Kink-turn | ||
| IL_9H3W_043 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_9H3W_044 | Major groove platform; stack outside cWW | ||
| IL_9H3W_045 | C-loop | ||
| IL_9H3W_046 | Single stack bend | ||
| IL_9H3W_047 | No text annotation | ||
| IL_9H3W_048 | tSH-tHW-tHS | ||
| IL_9H3W_049 | No text annotation | ||
| IL_9H3W_050 | UAA/GAN | ||
| IL_9H3W_051 | Tandem non-canonical cWW pairs | ||
| IL_9H3W_052 | tSH-tHW | ||
| IL_9H3W_053 | Single bulged U | ||
| IL_9H3W_054 | No text annotation | ||
| IL_9H3W_055 | tSH-tHW-tHS | ||
| IL_9H3W_056 | 180 degree turn | ||
| IL_9H3W_057 | Single bulged A | ||
| IL_9H3W_058 | UAA/GAN variation | ||
| IL_9H3W_059 | No text annotation | ||
| IL_9H3W_060 | Isolated tWW turn | ||
| IL_9H3W_061 | Major groove platform; stack outside cWW | ||
| IL_9H3W_062 | No text annotation | ||
| IL_9H3W_063 | Intercalated tWH | ||
| IL_9H3W_064 | tSH-tSH-tHH-tHS | ||
| IL_9H3W_065 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_9H3W_066 | Triple sheared | ||
| IL_9H3W_067 | Single bulged A | ||
| IL_9H3W_068 | Kink-turn related | ||
| IL_9H3W_069 | No text annotation | ||
| IL_9H3W_070 | Major groove intercalation | ||
| IL_9H3W_071 | No text annotation | ||
| IL_9H3W_072 | No text annotation | ||
| IL_9H3W_073 | UAA/GAN variation | ||
| IL_9H3W_074 | Bulged stacked bases | ||
| IL_9H3W_075 | Major groove platform | ||
| IL_9H3W_076 | No text annotation | ||
| IL_9H3W_077 | Single bulged U | ||
| IL_9H3W_078 | Minor groove platform | ||
| IL_9H3W_079 | Isolated tHS basepair with bulges | ||
| IL_9H3W_080 | Isolated non-canonical cWW pair | ||
| IL_9H3W_081 | No text annotation | ||
| IL_9H3W_082 | No text annotation | ||
| IL_9H3W_083 | No text annotation | ||
| IL_9H3W_084 | No text annotation | ||
| IL_9H3W_085 | No text annotation | ||
| IL_9H3W_086 | No text annotation | ||
| IL_9H3W_087 | Single bulged U | ||
| IL_9H3W_088 | Double sheared | ||
| IL_9H3W_089 | No text annotation | ||
| IL_9H3W_090 | tSH-tHS-tHW | ||
| IL_9H3W_091 | No text annotation | ||
| IL_9H3W_092 | No text annotation | ||
| IL_9H3W_093 | C-loop | ||
| IL_9H3W_094 | No text annotation | ||
| IL_9H3W_095 | Multiple bulged bases | ||
| IL_9H3W_096 | No text annotation | ||
| IL_9H3W_097 | Single bulged A | ||
| IL_9H3W_098 | No text annotation | ||
| IL_9H3W_099 | Major groove intercalation | ||
| IL_9H3W_100 | Multiple bulged bases with non-canonical cWW | ||
| IL_9H3W_101 | tHS double platform | ||
| IL_9H3W_102 | Major groove intercalation | ||
| IL_9H3W_103 | No text annotation | ||
| IL_9H3W_104 | No text annotation | ||
| IL_9H3W_105 | Symmetric double minor groove platform | ||
| IL_9H3W_106 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9H3W_001 | No text annotation | ||
| J3_9H3W_002 | No text annotation | ||
| J3_9H3W_003 | No text annotation | ||
| J3_9H3W_004 | No text annotation | ||
| J3_9H3W_005 | No text annotation | ||
| J3_9H3W_006 | No text annotation | ||
| J3_9H3W_007 | No text annotation | ||
| J3_9H3W_008 | No text annotation | ||
| J3_9H3W_009 | No text annotation | ||
| J3_9H3W_010 | Kink-turn 3-way junction | ||
| J3_9H3W_011 | No text annotation | ||
| J3_9H3W_012 | No text annotation | ||
| J3_9H3W_013 | No text annotation | ||
| J3_9H3W_014 | No text annotation | ||
| J4_9H3W_001 | No text annotation | ||
| J4_9H3W_002 | No text annotation | ||
| J4_9H3W_003 | No text annotation | ||
| J4_9H3W_004 | No text annotation | ||
| J4_9H3W_005 | No text annotation | ||
| J4_9H3W_006 | No text annotation | ||
| J4_9H3W_007 | No text annotation | ||
| J4_9H3W_008 | No text annotation | ||
| J4_9H3W_009 | No text annotation | ||
| J4_9H3W_010 | No text annotation | ||
| J4_9H3W_011 | No text annotation | ||
| J5_9H3W_001 | No text annotation | ||
| J5_9H3W_002 | No text annotation | ||
| J5_9H3W_003 | No text annotation | ||
| J5_9H3W_004 | No text annotation | ||
| J6_9H3W_001 | No text annotation | ||
| J6_9H3W_002 | No text annotation | ||
| J7_9H3W_001 | No text annotation | ||
| J7_9H3W_002 | No text annotation |
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