HL_9H3X_049

3D structure

PDB id

9H3X (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68_L35

Experimental method

ELECTRON MICROSCOPY

Resolution

4.12 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9H3X|1|A|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3X_049 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.3526

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9H3X|1|A|C|2248
9H3X|1|A|U|2249
9H3X|1|A|G|2250
9H3X|1|A|G|2251
9H3X|1|A|G|2252
9H3X|1|A|G|2253
9H3X|1|A|C|2254
9H3X|1|A|G|2255
9H3X|1|A|G|2256

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

Large ribosomal subunit protein bL27