HL_9H3X_050

3D structure

PDB id

9H3X (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68_L35

Experimental method

ELECTRON MICROSCOPY

Resolution

4.12 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

9H3X|1|A|A|2268, 9H3X|1|A|C|2275

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3X_050 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.2084

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9H3X|1|A|C|2264
9H3X|1|A|U|2265
9H3X|1|A|A|2266
9H3X|1|A|A|2267
9H3X|1|A|A|2268
9H3X|1|A|G|2269
9H3X|1|A|A|2270
9H3X|1|A|G|2271
9H3X|1|A|U|2272
9H3X|1|A|A|2273
9H3X|1|A|A|2274
9H3X|1|A|C|2275
9H3X|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

Large ribosomal subunit protein bL27