HL_9H4N_122

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

GAUCGAAAC

Length

9 nucleotides

Bulged bases

9H4N|1|n2|A|59

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H4N_122 not in the Motif Atlas

Homologous match to HL_2BTE_008

Geometric discrepancy: 0.4019

The information below is about HL_2BTE_008

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.6

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

9H4N|1|n2|G|53
9H4N|1|n2|A|54
9H4N|1|n2|U|55
9H4N|1|n2|C|56
9H4N|1|n2|G|57
9H4N|1|n2|A|58
9H4N|1|n2|A|59
9H4N|1|n2|A|60
9H4N|1|n2|C|61

Current chains

Chain n2

Transfer RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA