HL_9H51_001

3D structure

PDB id

9H51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with PUS1, METTL15 and RBFA(IN conformation) (state M1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUGGUCCUAG

Length

11 nucleotides

Bulged bases

9H51|1|A|U|656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H51_001 not in the Motif Atlas

Geometric match to HL_8B0X_001

Geometric discrepancy: 0.1133

The information below is about HL_8B0X_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.3

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9H51|1|A|U|654
9H51|1|A|U|655
9H51|1|A|U|656
9H51|1|A|G|657
9H51|1|A|G|658
9H51|1|A|U|659
9H51|1|A|C|660
9H51|1|A|C|661
9H51|1|A|U|662
9H51|1|A|A|663
9H51|1|A|G|664

Current chains

Chain A

RNA (969-MER)

Nearby chains

Chain D

28S ribosomal protein S5, mitochondrial