RNA 3D Hub //

9H51 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9H51_0011/A/654:664No text annotation
geometric
HL_8B0X_001
HL_73535.3
HL_9H51_0021/A/701:708No text annotation
HL_9H51_0031/A/734:740No text annotation
geometric
HL_3V7E_004
HL_30680.5
HL_9H51_0041/A/768:773GNRA
geometric
HL_5FJC_002
HL_34789.6
HL_9H51_0051/A/792:796No text annotation
geometric
HL_6U8D_003
HL_01957.1
HL_9H51_0061/A/804:809No text annotation
HL_9H51_0071/A/842:847No text annotation
geometric
HL_6GYV_006
HL_34789.6
HL_9H51_0081/A/894:899No text annotation
geometric
HL_6GYV_004
HL_34789.6
HL_9H51_0091/A/989:998No text annotation
geometric
HL_4LFB_015
HL_38491.4
HL_9H51_0101/A/1023:1028No text annotation
geometric
HL_9H3G_094
HL_34789.6
HL_9H51_0111/A/1115:1126No text annotation
HL_9H51_0121/A/1150:1155No text annotation
geometric
HL_5E08_001
HL_89167.4
HL_9H51_0141/A/1281:1287No text annotation

Problematic loops

#loop idProblemSequence
HL_9H51_013No text annotation
HL_9H51_015No text annotation
HL_9H51_016No text annotation
HL_9H51_017T-loop with 2 stacked bulged bases
HL_9H51_018No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9H51_0011/A/649:651,
1/A/667:668		No text annotation
IL_9H51_0021/A/674:676,
1/A/921:923		Isolated cWS basepair
geometric
IL_5E81_401
IL_84227.1
IL_9H51_0031/A/685:686,
1/A/859:861		No text annotation
geometric
IL_8B0X_002
IL_14190.4
IL_9H51_0041/A/690:692,
1/A/822:823		No text annotation
geometric
IL_9PN5_109
IL_14190.4
IL_9H51_0051/A/694:696,
1/A/819:820		No text annotation
geometric
IL_8B0X_004
IL_41261.1
IL_9H51_0061/A/727:729,
1/A/744:747		No text annotation
geometric
IL_9DFE_030
IL_05502.2
IL_9H51_0071/A/729:732,
1/A/742:744		No text annotation
geometric
IL_9DFE_030
IL_05502.2
IL_9H51_0081/A/756:761,
1/A/779:786		Kink-turn with non-sequential stacking
geometric
IL_4LFB_011
IL_46174.6
IL_9H51_0091/A/762:765,
1/A/777:778		Major groove platform; stack outside cWW
geometric
IL_1NTA_003
IL_74641.4
IL_9H51_0101/A/762:766,
1/A/775:778		No text annotation
IL_9H51_0111/A/765:766,
1/A/775:777		No text annotation
IL_9H51_0121/A/830:832,
1/A/855:856		No text annotation
geometric
IL_8B0X_016
IL_97561.7
IL_9H51_0131/A/834:838,
1/A/852:853		No text annotation
geometric
IL_8B0X_017
IL_26900.3
IL_9H51_0141/A/838:839,
1/A/850:852		Single bulged A
geometric
IL_2QUX_002
IL_14190.4
IL_9H51_0151/A/876:885,
1/A/910:913		No text annotation
IL_9H51_0161/A/887:893,
1/A/900:908		No text annotation
geometric
IL_9PN5_173
IL_52042.3
IL_9H51_0171/A/935:941,
1/A/1133:1134		No text annotation
geometric
IL_8B0X_025
IL_20847.3
IL_9H51_0181/A/946:950,
1/A/1044:1049		UAA/GAN
geometric
IL_4V9F_052
IL_10133.1
IL_9H51_0191/A/952:968,
1/A/1036:1042		No text annotation
IL_9H51_0201/A/974:980,
1/A/1008:1014		No text annotation
IL_9H51_0211/A/982:984,
1/A/1004:1006		Isolated non-canonical cWW pair
geometric
IL_9H3G_027
IL_01003.6
IL_9H51_0221/A/986:988,
1/A/999:1002		No text annotation
IL_9H51_0231/A/1020:1022,
1/A/1029:1030		Other IL
geometric
IL_3WBM_004
IL_18188.1
IL_9H51_0241/A/1062:1066,
1/A/1092:1093		Left turn
geometric
IL_4LFB_032
IL_29346.3
IL_9H51_0251/A/1067:1071,
1/A/1087:1091		No text annotation
geometric
IL_9H3G_204
IL_05821.3
IL_9H51_0261/A/1109:1111,
1/A/1130:1132		Isolated non-canonical cWW pair
geometric
IL_5AOX_001
IL_01003.6
IL_9H51_0271/A/1139:1147,
1/A/1158:1164		No text annotation
IL_9H51_0281/A/1175:1176,
1/A/1477:1479		No text annotation
geometric
IL_9PN5_195
IL_14190.4
IL_9H51_0291/A/1178:1181,
1/A/1473:1475		No text annotation
IL_9H51_0301/A/1186:1190,
1/A/1464:1468		No text annotation
IL_9H51_0381/A/1274:1277,
1/A/1298:1301		Double sheared
geometric
IL_4ZNP_002
IL_58355.4
IL_9H51_0391/A/1278:1279,
1/A/1289:1297		No text annotation
IL_9H51_0421/A/1489:1491,
1/A/1559:1561		Isolated non-canonical cWW pair
geometric
IL_8CRE_429
IL_71625.5
IL_9H51_0431/A/1491:1495,
1/A/1554:1559		No text annotation
IL_9H51_0441/A/1500:1504,
1/A/1546:1549		No text annotation
geometric
IL_9DFE_009
IL_74317.1
IL_9H51_0451/A/1507:1510,
1/A/1540:1543		Tandem non-canonical cWW pairs
geometric
IL_8CRE_475
IL_71194.4

Problematic loops

#loop idProblemSequence
IL_9H51_031Minor groove platform
IL_9H51_032No text annotation
IL_9H51_033Single bulged C
IL_9H51_034Isolated cWS basepair
IL_9H51_035Minor groove platform
IL_9H51_036No text annotation
IL_9H51_037No text annotation
IL_9H51_040No text annotation
IL_9H51_041No text annotation
IL_9H51_046No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9H51_0011/A/677:680,
1/A/866:872,
1/A/917:920		No text annotation
J3_9H51_0021/A/687:690,
1/A/823:830,
1/A/856:858		No text annotation
J3_9H51_0031/A/973:974,
1/A/1014:1020,
1/A/1030:1031		No text annotation
J3_9H51_0071/A/1268:1273,
1/A/1302:1308,
1/A/1317:1323		No text annotation
J4_9H51_0011/A/698:701,
1/A/708:715,
1/A/800:802,
1/A/811:817		No text annotation
J4_9H51_0021/A/717:724,
1/A/750:753,
1/A/789:791,
1/A/797:798		No text annotation
J4_9H51_0031/A/941:943,
1/A/1052:1057,
1/A/1098:1109,
1/A/1132:1133		No text annotation

Problematic loops

#loop idProblemSequence
J3_9H51_004No text annotation
J3_9H51_005No text annotation
J3_9H51_006No text annotation
J3_9H51_008No text annotation

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