HL_9H51_004

3D structure

PDB id

9H51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with PUS1, METTL15 and RBFA(IN conformation) (state M1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H51_004 not in the Motif Atlas

Geometric match to HL_5FJC_002

Geometric discrepancy: 0.0878

The information below is about HL_5FJC_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9H51|1|A|A|768
9H51|1|A|G|769
9H51|1|A|C|770
9H51|1|A|A|771
9H51|1|A|A|772
9H51|1|A|U|773

Current chains

Chain A

RNA (969-MER)

Nearby chains

Chain L

28S ribosomal protein S15, mitochondrial

Chain N

28S ribosomal protein S17, mitochondrial